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Home News Research and Science news Redefined ‘Tree of Life’ revealed in new Nature paper
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Redefined ‘Tree of Life’ revealed in new Nature paper

A global team of scientists have sequenced the DNA of more than 9500 flowering plant species to build a new and improved 'Tree of Life'.

23 April 2024

Prestigious scientific journal Nature releases a new paper “Phylogenomics and the rise of the angiosperms’ which forms part of Kew’s Tree of Life Initiative. The paper redefines our understanding of the evolutionary history of flowering plants and will allow us to answer key questions about plants in the future.

The paper results from a large-scale, international collaboration involving 279 scientists from 27 countries. CUBG’s Assistant Curator and palm specialist, Dr Ángela Cano, was a co-author on paper, and explains more about these findings:

Dr Cano standing in a rainforest of green trees and plants. She is wearing a turquoise t-shirt, white shirt and trousers behind a large palm frond and holding part of the plant in her hand. This has a red stem and small branch-like structures with small pale yellow berry-like fruits
Dr. Ángela Cano collecting the palm Prestoea ensiformis at the Santa Fé National Park, Panama. DNA from this palm was extracted as part of the PAFTOL study Click for information

“The study sampled over 8,000 plant genera, which combined, represent the broad diversity of flowering plants (angiosperms). The samples were gathered from a range of sources, including many from herbarium specimens – highlighting the importance of these invaluable collections. Some of these herbarium specimens were collected hundreds of years ago making this also a collaboration with collectors across time.”

Dr Cano stands in front of a white pick up truck which is parked in an area under a building. In front of her on the floor are laid out samples of different palms which she has collected after a day of fieldwork at the Fortuna nature reserve in Panama
Dr Ángela Cano and her samples collected after a day of fieldwork at the Fortuna nature reserve in Panama Click for information
A leaf like frond sample of the palm Geonoma monospatha lying on a piece of newspaper having been collected at Cerro Mariposa, Santa Fé, Panama. DNA from this palm was extracted as part of the PAFTOL study
Sample of Geonoma monospatha collected by Dr. Ángela Cano and her colleagues at Cerro Mariposa, Santa Fé, Panama. DNA from this palm was extracted as part of the PAFTOL study Click for information

DNA was extracted from these samples and sequenced using a novel technique, with the goal of building the tree of life of all flowering plants. The evolutionary tree of life underpins the biological sciences, providing a fundamental roadmap for exploring and predicting patterns of diversity. Mapping it is a huge and important undertaking, with various diagrams having been built over the centuries since Darwin first proposed the idea.

Ángela says: “Building the tree of life is a mission which has been attempted multiple times, each time implementing the latest scientific methods.

It was first done based on morphological traits – where related plants showed similar structures. This was followed by DNA analysis, comparing a handful of short DNA fractions either from the chloroplast or the nuclear genomes present in plant cells. More recently, the most ambitious push (2019) was sequencing and comparing the entire chloroplast genome of around 1,000 species.

However, this Plant and Fungal Trees of Life Project (PAFTOL) study pushes the boundaries even further. It involved sequencing 353 genes from the DNA of the nucleus, providing significantly more in-depth information. Also, it was applied to a 15-fold increase in plant species.

Dr Cano smiling looking at the camera with herarm outstretched over a long trailer full of herbarium specimens all bound up in paper and collecting frames and stacked horizontally in the trailer
Set of herbarium specimens of palms collected by Dr. Ángela Cano in Panama. DNA from some of these palms was extracted as part of the PAFTOL study Click for information

The results are significant for a number of reasons:

They confirm what was already known about the evolutionary relationships of most flowering plants.

They also clarify some relationships between plants which previously weren’t properly understood.

They also show important rearrangements in the classification of some major plant lineages. These are mainly within the Rosids, a large group of around 70,000 related plants which include more than a quarter of all flowering plants. Across all flowering plants, 12 orders (such as the Cucurbitales – where the cucumber is classified) and 10 families (including Asteraceae – the Daisy family) will require rearrangements according to the results of this study.

Finally, they also highlight some relationships that still need resolving, despite the huge technical improvements in analysis.”

Dr Cano wearing boots, trousers and white shirt stands looking at the camera and holding a large branch of a plant. She is next to a massive palm called Dictyocaryum lamarckianum. This has large root like structures above the ground which she is standing against. In the background is rainforest vegetation of the Darién National Park, Panama. DNA from this palm was extracted as part of the PAFTOL study.
Dr. Ángela Cano next to the massive palm Dictyocaryum lamarckianum at the Darién National Park, Panama. DNA from this palm was extracted as part of the PAFTOL study. Click for information

“The paper demonstrates, yet again, the enduring power of botanical collections for scientific discovery.”

Professor Sam Brockington, Curator, CUBG

One of the highlights of this work for Ángela is the re-definition of the order where palms are classified.

“When it comes to the history of plant classification, palms were originally the only members of the order Arecales. On the basis of analyses of plastid genomes, this order was then redefined to include the family Dasypogonaceae (a small family endemic to Australia). However now, our most recent study based on nuclear DNA does not support this change. Therefore, palms are again exclusive members of Arecales. As a palm specialist, having collected many of the palm samples used in this study from remote localities in the Americas, I am delighted that these results confirm what I and other palm specialists have known for decades – the wonderful uniqueness of the palms!”

CUBG’s Curator, Professor Sam Brockington says: “I’d like to congratulate Angie and the other members of the PAFTOL collaboration for an extremely important paper that redefines our understanding of the relationships among the major plant lineages. The precise circumscription of the Arecales has long been a contentious issue, and it is fitting that the important samples that Angie has collected over a career dedicated to studying palms, are an essential contribution to this work. The paper demonstrates, yet again, the enduring power of botanical collections for scientific discovery.”

Read more about this story from Royal Botanic Gardens, Kew here.

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